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A protein fragments picker
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Francois Berenger 7cbee359cf fix compilation 
because of stupid changes in Core.List and Core.Array:
~cmp -> ~compare ... :(
2019-09-26 12:06:11 +09:00
bin initial import from http://www.riken.jp/zhangiru/software/fragger.tgz 2015-02-16 10:20:38 +01:00
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ext/ranker_AA_QCP initial import from http://www.riken.jp/zhangiru/software/fragger.tgz 2015-02-16 10:20:38 +01:00
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README.md added DOI badge in README.md 2017-09-01 12:15:28 +09:00

README.md

fragger

protein fragments picker

Fragger is a protein fragment picker allowing to create and query protein fragment databases.

All fragment lengths are supported and any set of PDB files can be used to create a database.

Fragger can efficiently search a fragment database with a query fragment and an RMSD threshold. The query fragment can have structural gaps and the allowed amino acid sequences matching a query can be constrained via a regular expression of one-letter amino acid codes.

Fragger also incorporates a tool to compute the RMSD of one versus many fragments in high throughput.

DOI